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NanoCommons User Guidance Handbook
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Working Towards a Harmonized Nanosafety E-Infrastructure for Data and In Silico Tools, 2020 U.S.-EU NanoEHS COR Workshop: Bridging Insights and Perspectives, September 16-17, Virtual Meeting
You can still register to see the recordings.
Intro to NanoCommons by Martin Himly, PLUS (at the Jaqpot Hackathon)
Online training tools for nanosafety assessment – NanoCommons for researchers and safety assessors in industry, academia and regulatory authorities
Introductions targeting specific stakeholders
What does the NanoCommons e-infrastructure offer for the Governance of nano- and advanced materials?
The NanoCommons e-infrastructure – A quick guide to what and how of nanoinformatics in safety assessment suiting basic to expert users in academia, industry, and regulatory agencies
H2020 NanoCommons Transnational Access Services: Data management in nanosafety research. From bench to database thus streamlining analysis and publication
Adoption of OpenRisknet solutions by NanoSafety community and NanoCommons infrastructure
The NanoCommons knowledge infrastructure built to support the research communities, industrial users and regulators in the area of nanomaterials safety assessment
Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
D4.4 – First version of data warehouse and collaborative knowledge infrastructure
D5.1 – Initial Knowledge Infrastructure Functionalities and Services Implemented
NanoCommons Knowledge Base
NanoCommons Knowledgebase by Dieter Maier, Biomax (at the Jaqpot Hackathon)
Using the NanoCommons Knowledge portal for templates and annotation upload
ACEnano protocols and data warehouse
ACEnano knowledge infrastructure
ACEnano knowledge infrastructure data management training
ACEnano knowledge infrastructure to support data collection, methods optimisation and knowledge sharing in the area of physicochemical characterisation of nanomaterials
ACEnano knowledge infrastructure manual
Reporting standards and semantic annotation
Introduction to data /metadata management in nanosafety assessment workflows
Can an InChI for Nano Address the Need for a Simplified Representation of Complex Nanomaterials across Experimental and Nanoinformatics Studies?
Annotating Your Experimental Data
Spreadsheets in nanosafety research
Findable, Accessible, Interoperable and Re-usable – FAIR
FAIR for NanoSafety: where do we stand?
FAIR starts with findable: data sets and nanomaterials
D5.1 – Initial Knowledge Infrastructure Functionalities and Services Implemented
D5.2 – First big data (omics) analysis and mining tools integrated into KnowledgeBase
D5.3. – First raw data processing and knowledge extraction tools integrated into KB and first theoretical descriptor calculation services available
D5.4 – First predictive nanoQSAR models integrated into NanoCommons KnowledgeBase
Jaqpot
Jaqpot Suite by Philip Doganis, NTUA (part of Jaqpot Hackathon)
Jaqpot 5 Tutorial: How to deploy a predictive model using the jaqpotpy library
Jaqpot 5 Tutorial : User accounts
Jaqpot 5 Tutorial: How to manage and use organisations
Jaqpot 5 Tutorial : How to access and use an existing predictive model
Jaqpot 5 Tutorial: How to simulate biodistribution scenarios using custom PBPK models
Read-across predictions of nanoparticle hazard endpoints: a mathematical optimization approach
PBPK modelling on the Jaqpot web platform – a PAA-peg nanoparticles case study
Enalos cloud platform
Enalos Cloud Platform Transnational Access Services Through NanoCommons H2020 Infrastructure Project
Video on Enalos Nanoinformatics Cloud Platform: A Safe-by-Design Tool for Functionalized Nanomaterials
Webinar recording of Enalos NanoXtract TEM image analysis tool
Introductory video on Nanoinformatics Model for Zeta Potential Prediction Powered by Enalos Cloud Platform
Biocorona modelling
Introduction to biocorona in silico modeling around nanoparticles
Fate modelling
FAIR for NanoSafety: where do we stand?
Guidenano
Introduction webinar to Guidenano risk assessment tool
Video clip on Guidenano tool: first insight of the tool
D5.5 – A workflow and checklist of key information needed from modelling tool owners to facilitate integration into KB
D6.1 – A workflow and checklist for experimental design and informatics workflow for risk assessment for use in WP9
Electronic Lab Notebooks by Iseult Lynch, UoB (part of Jaqpot hackathon)
ELN hackathon
SciNote
Scinote online notebooks
Webinar recording: Introduction to Scinote online notebooks
EU NanoSafety Ontology WIKI provided by GRACIOUS (contact helpdesk to request access)
D4.3 – Initial NanoCommons Ontology
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ACEnano approach for development of physchem terminology
eNanoMapper ontology
Introduction to the eNanoMapper ontology
Introduction to the eNanoMapper ontology – additional material
Expanding the eNanoMapper Ontology – ICBO2020
Adding ontology terms
Browsing the eNanoMapper ontology with BioPortal, AberOWL and Protégé
